FastaReader.c File Reference

Implementation for the FastaReader and FastaFile classes. More...

#include "FastaReader.h"
#include "../formats/fasta.h"
#include "FastaBuff.h"
#include "unicodeobject.h"
#include <stdint.h>
#include <stdio.h>
#include <string.h>

Include dependency graph for FastaReader.c:

Macros
#define	BUFFER_GROWTH   2

Functions
static int	FastaFile_init (FastaFile *self, PyObject *args, PyObject *kwds)
	Saves the provided filename and checks if it exists.
static PyObject *	FastaFile_iter (FastaFile *self)
	Creates a FastaReader object from the FastaFile.
static int	FastaReader_init (FastaReader *self, PyObject *args, PyObject *kwds)
	Initialize a FastaReader object.
static PyObject *	FastaReader_next (FastaReader *restrict self)
	Read the next sequence from the FastaReader object.
static void	FastaReader_dealloc (FastaReader *restrict self)
	Deallocate the FastaReader object.

Variables
static PyMethodDef	FastaFile_methods []
	Methods for the FastaFile class.
PyTypeObject	FastaFileType
	The Python type definition for the FastaFile object.
PyTypeObject	FastaReaderType
	The Python type definition for the FastaReader object.

Detailed Description

Implementation for the FastaReader and FastaFile classes.

Macro Definition Documentation

BUFFER_GROWTH

#define BUFFER_GROWTH   2

Variable Documentation

FastaFile_methods

PyMethodDef FastaFile_methods[]

static

Initial value:

= {
    {"__enter__", (PyCFunction)file_enter, METH_NOARGS, ""},
    {"__exit__", (PyCFunction)file_exit, METH_VARARGS, ""},
    {NULL, NULL, 0, NULL} 
}

Methods for the FastaFile class.